ncbi/ncbi_disease
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How to use sschet/biobert_diseases_ner with Transformers:
# Use a pipeline as a high-level helper
from transformers import pipeline
pipe = pipeline("token-classification", model="sschet/biobert_diseases_ner") # Load model directly
from transformers import AutoTokenizer, AutoModelForTokenClassification
tokenizer = AutoTokenizer.from_pretrained("sschet/biobert_diseases_ner")
model = AutoModelForTokenClassification.from_pretrained("sschet/biobert_diseases_ner")BioBERT model fine-tuned in NER task with BC5CDR-diseases and NCBI-diseases corpus
This was fine-tuned in order to use it in a BioNER/BioNEN system which is available at: https://github.com/librairy/bio-ner